Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs71379765 chr2:107242924 AT/A 0.000239 176 26.57 23.53 25.87 KM Plot
PCPG rs71395187 chr2:24306107 C/CT 0.000157 170 25.17 28.47 17.43 KM Plot
PCPG rs71395190 chr2:24311217 T/TTA 0.00011 178 25.28 26.92 17.43 KM Plot
PCPG rs71395202 chr2:24343573 G/GCAC 0.00011 178 25.4 26.57 17.43 KM Plot
PCPG rs71397301 chr15:30921629 C/T 0 176 25.92 20.37 3.17 KM Plot
PCPG rs71397406 chr2:24351570 C/CTT 0.00011 178 25.28 26.92 17.43 KM Plot
PCPG rs71399724 chr15:31008335 A/G 0 176 25.67 24.23 2.12 KM Plot
PCPG rs71403847 chr16:71468226 T/C 0.000111 178 24.52 27.22 43.12 KM Plot
PCPG rs71429026 chr14:74381049 G/A 1.16E-5 176 25.4 27.2 10.43 KM Plot
PCPG rs71429027 chr14:74388236 A/G 1.58E-5 172 25.4 27.2 10.43 KM Plot
PCPG rs71429030 chr14:74473055 C/T 4.63E-7 175 25.28 30.93 7.4 KM Plot
PCPG rs71429035 chr14:74541014 G/A 0.000202 177 25.28 27.27 10.43 KM Plot
PCPG rs71429036 chr14:74557472 G/T 2.24E-5 176 25.4 27.43 10.3 KM Plot
PCPG rs71429038 chr14:74568223 G/A 2.24E-5 176 25.4 27.43 10.3 KM Plot
PCPG rs71429039 chr14:74570261 G/A 2.24E-5 176 25.4 27.43 10.3 KM Plot